Research from 2022
Stochastic Models of Jaya and Semi-steady-state Jaya Algorithms, IEEE Access, Uday Chakraborty
Research from 2021
Connecting the dots: The boons and banes of network modeling, Patterns, Sharlee Climer
COVID-19 and the differential dilemma, Patterns, Sharlee Climer
Research from 2020
Linking crop traits to transcriptome differences in a progeny population of tetraploid potato, BMC Plant Biology, Erik Alexandersson, Sandeep Kushwaha, Aastha Subedi, Deborah Weighill, Sharlee Climer, and Daniel Jacobson
Semi-steady-state jaya algorithm for optimization, Applied Sciences (Switzerland), Uday K. Chakraborty
ICedge: When Edge Computing Meets Information-Centric Networking, IEEE Internet of Things Journal, Spyridon Mastorakis, Abderrahmen Mtibaa, Jonathan Lee, and Satyajayant Misra
Analysis of several key factors influencing deep learning-based inter-residue contact prediction, Bioinformatics, Tianqi Wu, Jie Hou, Badri Adhikari, and Jianlin Cheng
Research from 2019
PREPRINT - DEEPCON: Protein Contact Prediction using Dilated Convolutional Neural Networks with Dropout, bioRxiv, Badri Adhikari
A new model for constant fuel utilization and constant fuel flow in fuel cells, Applied Sciences (Switzerland), Uday K. Chakraborty
Proton exchange membrane fuel cell stack design optimization using an improved Jaya algorithm, Energies, Uday K. Chakraborty
The P-ART framework for placement of virtual network services in a multi-cloud environment, Computer Communications, Lav Gupta, Raj Jain, Aiman Erbad, and Deval Bhamare
PREPRINT - SAXSDom: Modeling multi-domain protein structures using small-angle X-ray scattering data, bioRxiv, Jie Hou, Badri Adhikari, John Tanner, and Jianlin Cheng
A Truthful Auction Mechanism for Mobile Crowd Sensing With Budget Constraint, IEEE Access, Yuanni Liu, Xiaodan Xu, Jianli Pan, Jianhui Zhang, and Guofeng Zhao
Efficient and Secure 5G Core Network Slice Provisioning Based on VIKOR Approach, IEEE Access, Xin Li, Chengcheng Guo, Lav Gupta, and Raj Jain
Towards efficiently provisioning 5G core network slice based on resource and topology attributes, Applied Sciences (Switzerland), Xin Li, Chengcheng Guo, Jun Xu, Lav Gupta, and Raj Jain
Identification and localization of Tospovirus genus-wide conserved residues in 3D models of the nucleocapsid and the silencing suppressor proteins, Virology Journal, Cristian Olaya, Badri Adhikari, Gaurav Raikhy, Jianlin Cheng, and Hanu R. Pappu
[Accepted Article Manuscript Version (Postprint)] Distributed Data-Gathering and -Processing in Smart Cities: An Information-Centric Approach, The Open Journal of Internet of Things, Reza Tourani, Abderrahmen Mtibaa, and Satyajayant Misra
Distributed Data-Gathering and -Processing in Smart Cities: An Information-Centric Approach, The Open Journal of Internet of Things, Reza Tourani, Abderrahmen Mtibaa, and Satyajayant Misra
Machine Learning-Based Network Vulnerability Analysis of Industrial Internet of Things, IEEE Internet of Things Journal, Maede Zolanvari, Marcio Teixeira, Lav Gupta, Khaled Khan, and Raj Jain
Research from 2018
Correction: A Novel Variant in CMAH Is Associated with Blood Type AB in Ragdoll Cats, PLoS ONE, Badri Adhikari
CONFOLD2: Improved contact-driven ab initio protein structure modeling, BMC Bioinformatics, Badri Adhikari and Jianlin Cheng
Reversible and irreversible potentials and an inaccuracy in popularmodels in the fuel cell literature, Energies, Uday K. Chakraborty
Phytobiome and Transcriptional Adaptation of Populus deltoides to Acute Progressive Drought and Cyclic Drought, Phytobiomes journal, Benjamin Garcia, Jessy Labbé, Piet Jones, Piet Jones, Paul Abraham, Ian Hodge, Ian Hodge, Sharlee Climer, Sara Jawdy, Lee Gunter, Gerald Tuskan, Xiaohan Yang, Timothy Tschaplinski, Daniel Jacobson, and Daniel Jacobson
DeepSF: Deep convolutional neural network for mapping protein sequences to folds, Bioinformatics, Jie Hou, Badri Adhikari, and Jianlin Cheng
An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12, Scientific Reports, Chen Keasar, Liam J. McGuffin, Björn Wallner, Gaurav Chopra, Badri Adhikari, Debswapna Bhattacharya, Lauren Blake, Leandro Oliveira Bortot, Renzhi Cao, B. K. Dhanasekaran, Itzhel Dimas, Rodrigo Antonio Faccioli, Eshel Faraggi, Robert Ganzynkowicz, Sambit Ghosh, Soma Ghosh, Artur Giełdoń, Lukasz Golon, Yi He, Lim Heo, Jie Hou, Main Khan, Firas Khatib, George A. Khoury, Chris Kieslich, David E. Kim, Pawel Krupa, Gyu Rie Lee, Hongbo Li, Jilong Li, Agnieszka Lipska, Adam Liwo, and Ali Hassan A. Maghrabi
An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12., Scientific Reports, Chen Keasar, Liam McGuffin, Björn Wallner, Gaurav Chopra, Badri Adhikari, Debswapna Bhattacharya, Lauren Blake, Leandro Bortot, Renzhi Cao, B. Dhanasekaran, Itzhel Dimas, Rodrigo Faccioli, Eshel Faraggi, Robert Ganzynkowicz, Sambit Ghosh, Soma Ghosh, Artur Giełdoń, Lukasz Golon, Yi He, Lim Heo, Jie Hou, Main Khan, Firas Khatib, George Khoury, Chris Kieslich, David Kim, Pawel Krupa, Gyu Lee, Hongbo Li, Jilong Li, Agnieszka Lipska, Adam Liwo, Ali Maghrabi, Milot Mirdita, Shokoufeh Mirzaei, Magdalena Mozolewska, Melis Onel, Sergey Ovchinnikov, Anand Shah, Utkarsh Shah, Tomer Sidi, Adam Sieradzan, Magdalena Ślusarz, Rafal Ślusarz, James Smadbeck, Phanourios Tamamis, Nicholas Trieber, Tomasz Wirecki, and Yanping Yin
Research from 2017
Improved protein structure reconstruction using secondary structures, contacts at higher distance thresholds, and non-contacts, BMC Bioinformatics, Badri Adhikari and Jianlin Cheng
Dynamic Technology Challenges Static Codes of Ethics, Orbit, Bo Brinkman, Catherine Flick, Don Gotterbarn, Keith Miller, Kate Vazansky, and Marty Wolf
Dynamic Technology Challenges Static Codes of Ethics, Orbit, Bo Brinkman, Catherine Flick, Don Gotterbarn, Keith Miller, Kate Vazansky, and Marty J. Wolf
Finger-stylus for non touch-enable systems, Journal of King Saud University - Engineering Sciences, Ankit Chaudhary
Introduction to the special issue on computer vision in road safety and intelligent traffic, Eurasip Journal on Image and Video Processing, Ankit Chaudhary, Reinhard Klette, J. L. Raheja, and Xia Jin
Deep learning methods for protein torsion angle prediction, BMC Bioinformatics, Haiou Li, Jie Hou, Badri Adhikari, Qiang Lyu, and Jianlin Cheng
Why We Should Have Seen That Coming, Orbit, K.W Miller, Marty Wolf, and F.S. Grodzinsky
Research from 2016
ConEVA: A toolbox for comprehensive assessment of protein contacts, BMC Bioinformatics, Badri Adhikari, Jackson Nowotny, Debswapna Bhattacharya, Jie Hou, and Jianlin Cheng
Chromosome3D: Reconstructing three-dimensional chromosomal structures from Hi-C interaction frequency data using distance geometry simulated annealing, BMC Genomics, Badri Adhikari, Tuan Trieu, and Jianlin Cheng
A novel variant in CMAH is associated with blood type AB in Ragdoll cats, PLOS ONE, Barbara Gandolfi, Robert Grahn, Nicholas Gustafson, Daniela Proverbio, Eva Spada, Badri Adhikari, Janling Cheng, Gordon Andrews, Leslie Lyons, and Chris Helps
Detecting And Tracking Attacks in Mobile Edge Computing Platforms, Qatar Foundation Annual Research Conference Proceedings, Abderrahmen Mtibaa, Khaled A. Harras, and Hussein Alnuweiri
[Final accepted version] Maintaining regularity and generalization in data using the minimum description length principle and genetic algorithm: Case of grammatical inference, Swarm and Evolutionary Computation, Hari Mohan Pandey, Ankit Chaudhary, Deepti Mehrotra, and Graham Kendall
Latitudinal clines of the human vitamin D receptor and skin color genes, G3: Genes, Genomes, Genetics, Dov Tiosano, Laura Audi, Sharlee Climer, Weixiong Zhang, Alan R. Templeton, Monica Fernández-Cancio, Ruth Gershoni-Baruch, José Miguel Sánchez-Muro, Mohamed El Kholy, and Zèev Hochberg
Research from 2015
Recent Trends in Hand Gesture Recognition GCSR v.3, Ankit Chaudhary
Human gephyrin is encompassed within giant functional noncoding yin–yang sequences, Nature Communications, Sharlee Climer, Alan Templeton, and Weixiong Zhang
Moving from capstones toward cornerstones: Successes and challenges in applying systems biology to identify mechanisms of autism spectrum disorders, Frontiers in Genetics, Nathan Kopp, Sharlee Climer, and Joseph D. Dougherty
IEEE Access Special Section Editorial: Recent Advances in Software Defined Networking for 5G Networks, IEEE Access, Mugen Peng, Tao Huang, Y. Richard Yu, and Jianli Pan
Research from 2014
Allele-Specific Network Reveals Combinatorial Interaction That Transcends Small Effects in Psoriasis GWAS, PLoS Computational Biology, Sharlee Climer, Alan R. Templeton, and Weixiong Zhang
Recent advancements in computer & software technology, Scientific World Journal, K. K. Mishra, A. K. Misra, Peter Mueller, Gregorio Martinez Perez, Sanjiv K. Bhatia, and Yong Wang
Research from 2012
[Accepted Article Manuscript Version (Postprint)] Track Me to Track Us: Leveraging Short Range Wireless Technologies for Enabling Energy Efficient WI-Fi-Based Localization, Qatar Foundation Annual Research Forum Volume 2012 Issue 1, Mohamed Abdellatif, Abderrahmen Mtibaa, and Khaled Harras
Research from 2011
Towards Node Cooperation in Mobile Opportunistic Networks, Qatar Foundation Annual Research Forum Proceedings, Abderrahmen Mtibaa and Khaled Harras
Research from 2010
Paranets: A Parallel Network Architecture for the Future Internet, Qatar Foundation Annual Research Forum, Khaled Harras and Abderrahmen Mtibaa
Software Test Automation, Phillip Laplante, Fevzi Belli, Jerry Gao, Greg Kapfhammer, Keith Miller, W. Eric Wong, and Dianxiang Xu
Software Test Automation, Phillip Laplante, Fevzi Belli, Jerry Gao, Greg Kapfhammer, Keith Miller, W. Wong, and Dianxiang Xu
Research from 2009
Review of Information Technology and Moral Philosophy, Studies in Ethics, Law, and Technology, Keith Miller and Bethany Spielman
Research from 2004
Creating walk-through images from a video sequence of a dynamic scene, Presence: Teleoperators and Virtual Environments, Hyung W. Kang and Sung Yong Shin