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Research from 2020

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Semi-steady-state jaya algorithm for optimization, Applied Sciences (Switzerland), Uday K. Chakraborty

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Analysis of several key factors influencing deep learning-based inter-residue contact prediction, Bioinformatics, Tianqi Wu, Jie Hou, Badri Adhikari, and Jianlin Cheng

Research from 2019

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A new model for constant fuel utilization and constant fuel flow in fuel cells, Applied Sciences (Switzerland), Uday K. Chakraborty

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Proton exchange membrane fuel cell stack design optimization using an improved Jaya algorithm, Energies, Uday K. Chakraborty

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Identification and localization of Tospovirus genus-wide conserved residues in 3D models of the nucleocapsid and the silencing suppressor proteins, Virology Journal, Cristian Olaya, Badri Adhikari, Gaurav Raikhy, Jianlin Cheng, and Hanu R. Pappu

Research from 2018

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CONFOLD2: Improved contact-driven ab initio protein structure modeling, BMC Bioinformatics, Badri Adhikari and Jianlin Cheng

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Reversible and irreversible potentials and an inaccuracy in popularmodels in the fuel cell literature, Energies, Uday K. Chakraborty

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DeepSF: Deep convolutional neural network for mapping protein sequences to folds, Bioinformatics, Jie Hou, Badri Adhikari, and Jianlin Cheng

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An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12, Scientific Reports, Chen Keasar, Liam J. McGuffin, Björn Wallner, Gaurav Chopra, Badri Adhikari, Debswapna Bhattacharya, Lauren Blake, Leandro Oliveira Bortot, Renzhi Cao, B. K. Dhanasekaran, Itzhel Dimas, Rodrigo Antonio Faccioli, Eshel Faraggi, Robert Ganzynkowicz, Sambit Ghosh, Soma Ghosh, Artur Giełdoń, Lukasz Golon, Yi He, Lim Heo, Jie Hou, Main Khan, Firas Khatib, George A. Khoury, Chris Kieslich, David E. Kim, Pawel Krupa, Gyu Rie Lee, Hongbo Li, Jilong Li, Agnieszka Lipska, Adam Liwo, and Ali Hassan A. Maghrabi

Research from 2017

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Improved protein structure reconstruction using secondary structures, contacts at higher distance thresholds, and non-contacts, BMC Bioinformatics, Badri Adhikari and Jianlin Cheng

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Deep learning methods for protein torsion angle prediction, BMC Bioinformatics, Haiou Li, Jie Hou, Badri Adhikari, Qiang Lyu, and Jianlin Cheng

Research from 2016

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ConEVA: A toolbox for comprehensive assessment of protein contacts, BMC Bioinformatics, Badri Adhikari, Jackson Nowotny, Debswapna Bhattacharya, Jie Hou, and Jianlin Cheng

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Chromosome3D: Reconstructing three-dimensional chromosomal structures from Hi-C interaction frequency data using distance geometry simulated annealing, BMC Genomics, Badri Adhikari, Tuan Trieu, and Jianlin Cheng

Research from 2014

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Recent advancements in computer & software technology, Scientific World Journal, K. K. Mishra, A. K. Misra, Peter Mueller, Gregorio Martinez Perez, Sanjiv K. Bhatia, and Yong Wang